PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0548s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 637aa    MW: 69047.2 Da    PI: 6.2654
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0548s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30385443259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Kalax.0548s0013.1.p 385 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILVTTYEGNHNHP 443
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-33369445IPR003657WRKY domain
SuperFamilySSF1182901.7E-27377445IPR003657WRKY domain
PROSITE profilePS5081129.7379445IPR003657WRKY domain
SMARTSM007741.7E-36384444IPR003657WRKY domain
PfamPF031062.5E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MATKAGFSSS GLSIDSDPFS SSSSPPIQHH LFFHPPPPPH IHYMESTTTA TSAHSKASWS  60
NPSPTIQFPL NLNYTSPDEH QPQDDDHGDI KFIHDDLRLS SDNEDHPHNR VINEMDFFAV  120
ADDHNKKKLI MNEDGGSSKQ AASTDNFDHQ NATTKDPHHG STQDFNNVYT GLHLLTANTS  180
STDQSVVDDG SSPASDDARA KNEIVMLQAE IERMNKENQR LKDMLSHVSN NYSAMQVHLM  240
TLGDSQKKDA RDQQQLQMIA QEHQKEDQQQ MLGGSPQKQL MDLGLAPASD IHDQHSLSSS  300
ENHEDGRSNS SPTNLEAASK LQMEEAREQI RVGMGREGEA AHGLPNKVPK FNPSKSNADQ  360
ASSTEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCPVRK  420
QVQRCAEDRT ILVTTYEGNH NHPLPPAAMA MASTTSSAAR MLLSGSMSSA DGLMNPNFLA  480
RTLLPCSSNM ATISASAPFP TVTLDLTLNP NATLPPPNTL TQIQSQFQNP SQNLPLLPQI  540
LTQALYSHSK FSGLHMSQND MDSSSLAPKQ QGSLADSLTA ASAAIAADPN FTAVIAAAIS  600
SFIGNSHPSN NITNNRTNSN TDSGANIVNS SSFPEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21371447176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269696.21e-180PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-130WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLF6HIC71e-180F6HIC7_VITVI; Putative uncharacterized protein
STRINGVIT_12s0059g00880.t011e-179(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-106WRKY DNA-binding protein 31